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qtl.outbred: Interfacing outbred line cross data with the R/qtl mapping software
Dalarna University, School of Technology and Business Studies, Statistics.ORCID iD: 0000-0003-4390-1979
2011 (English)In: BMC Research Notes, ISSN 1756-0500, Vol. 4, no 154Article in journal (Refereed) Published
Abstract [en]

Background

qtl.outbred is an extendible interface in the statistical environment, R, for combining quantitative trait loci (QTL) mapping tools. It is built as an umbrella package that enables outbred genotype probabilities to be calculated and/or imported into the software package R/qtl.

Findings

Using qtl.outbred, the genotype probabilities from outbred line cross data can be calculated by interfacing with a new and efficient algorithm developed for analyzing arbitrarily large datasets (included in the package) or imported from other sources such as the web-based tool, GridQTL.

Conclusion

qtl.outbred will improve the speed for calculating probabilities and the ability to analyse large future datasets. This package enables the user to analyse outbred line cross data accurately, but with similar effort than inbred line cross data.

Place, publisher, year, edition, pages
BioMed Central, 2011. Vol. 4, no 154
National Category
Natural Sciences
Research subject
Komplexa system - mikrodataanalys
Identifiers
URN: urn:nbn:se:du-10641DOI: 10.1186/1756-0500-4-154OAI: oai:DiVA.org:du-10641DiVA: diva2:548298
Note

Open access

Available from: 2012-08-30 Created: 2012-08-30 Last updated: 2015-06-16Bibliographically approved

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CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf